
Payment Challenges Merchants Face
While a smooth payment flow and a curated set of methods sound ideal, implementing and managing that system is no small feat for merchants. Working with expanding e-commerce companies has given me firsthand experience with the various difficulties they face when handling large-scale payments. Here are some of the most common hurdles and pitfalls and why they matter:
📌 Technical Integrations and Complexity
To support multiple payment methods and providers, merchants often have to perform complex technical integrations. Each payment gateway or provider might have its own API, its own quirks, and its own maintenance demands. If you decide to offer five different payment options, you might end up juggling five different integrations (unless you use an aggregator or an orchestration layer to consolidate them). Many growing companies struggle with setting up these payment systems, especially early on. It requires specialized knowledge to integrate without errors – a poorly implemented payment API can result in failed transactions or even security vulnerabilities.
Not every merchant has a large tech team, and dedicating developer hours to payments means less time for other features. As a result, some merchants limit the methods they offer simply because of the integration burden. Others go ahead but then find themselves firefighting issues across multiple systems. One way the industry is addressing this is through payment orchestration platforms, which act as a unified layer to manage multiple payment providers. These platforms can reduce the load on a merchant’s tech team by handling the connections and providing a single interface. They can also enable smart routing (sending a transaction to another provider if one fails) to increase reliability. However, using such platforms is itself an integration and often a significant investment.
📌 Compliance and Regulatory Complexity
Payments are heavily regulated, and rightly so, because they deal with money movement and personal data. Merchants often find themselves entangled in a web of regulations: PCI DSS for card security, GDPR or other data privacy laws, PSD2 and strong authentication rules in Europe, AML/KYC if they handle certain transactions, and so on. For a merchant whose core business is retail, not finance, this can be overwhelming. Neglecting compliance is dangerous – it can lead to fines or getting cut off by payment partners. Yet, many startups and SMEs overlook these aspects at first.
As one fintech expert noted, early-stage companies tend to focus on tech and UI, but compliance is “fundamental to a strong, lasting business,” not just a checkbox. If you’re a merchant, you might need to invest in compliance officers or outsource some compliance tasks to your payment providers. But relying on providers only goes so far; ultimately, the merchant is responsible for their end. For example, even if you use a third-party gateway (so you don’t touch card data directly), you must still handle customer data lawfully and respond properly to things like chargeback disputes. In cross-border sales, regulatory complexity doubles – each country might have its own consumer protection laws or requirements for payment processing.
📌Fraud Management and Security Expertise
As mentioned earlier, fraud prevention is an ongoing battle. Large merchants often have entire teams or sophisticated systems dedicated to monitoring transactions, reviewing flagged orders, and tweaking fraud rules. Smaller merchants might rely entirely on whatever basic fraud checks their payment service provider (PSP) offers. But the limitations of relying solely on pre-defined offerings from PSPs become clear as you scale. A generic fraud filter might either be too strict (blocking good customers) or too lax (letting fraud through) for your specific business model. Tuning it requires knowledge and sometimes additional tools. Managing fraud also means handling chargebacks (when customers dispute charges). Each chargeback not only potentially costs revenue and goods, but also fees and damage to your standing with payment processors.
High chargeback rates can even get a merchant blacklisted by card networks. So, merchants face a challenge: how to keep fraud rates low without negatively impacting conversion rates. It often requires investing in better fraud detection solutions (some use machine learning, device fingerprinting, etc.) or hiring fraud analysts. Those are costs and complexities that aren’t obvious when a business is just starting out. As one insightful report highlighted, every declined payment that could have been approved is a lost sale, and those add up to huge losses globally. So merchants need to optimise approval rates (sometimes by having multiple acquisition connections or fallback options) while still catching fraud—a very delicate balance.
📌 Multiple Providers and Fragmentation
When a merchant expands to new markets, they often find that one payment provider (PSP) can’t do it all. Perhaps their main PSP doesn’t support a popular local payment method in Country X, so they integrate an additional specialist for that. Or they find that their authorization rates in Country Y are poor with their current acquirer, so they add another. Over time, these scenarios can lead to a fragmented payment setup: different gateways for different regions or methods. Managing all these can be a nightmare. Reconciliation becomes complex — you might get separate reports from each provider and have to consolidate them to tally your sales.
If a customer asks for a refund, you need to figure out which system processed their payment. Payment orchestration comes in here as a potential solution: it can centralise multiple providers on one platform, automate smart routing, and give a single dashboard. But not all businesses are there yet or can afford such solutions. Without orchestration, merchants often have to build internal dashboards and logic to manage the tangle of payment flows. It’s a challenge that requires both engineering and operational effort.
📌 Dependency on PSP’s Features and Roadmap
Many merchants use a third-party payment service provider for simplicity. That usually means you get only the features the PSP offers. The situation can be limiting. For example, if the PSP doesn’t support a new payment method that’s gaining traction, you either wait and hope they add it, or you integrate it via another provider (with the payment challenges noted above). If the PSP’s fraud tools aren’t catching a new type of scam, you might not have the flexibility to adapt quickly. While some PSPs offer extensive customisation options, others remain largely uncustomizable. Being tied to one platform can create a vendor lock-in, where moving to another solution or adding new capabilities becomes very costly (because you’d have to reintegrate or even ask customers to migrate stored payment info).
This is why some larger merchants choose to build more in-house or use multiple PSPs—to avoid putting all their eggs in one basket. However, juggling multiple systems has its costs, as we discussed. It’s a trade-off: the convenience of a single PSP versus the flexibility of a more custom approach. Merchants must engage in proactive communication with their PSPs, advocate for essential features, and have a backup plan in place if their needs aren’t being met. The PSP’s predefined offering might also include fee structures that aren’t optimal (e.g., maybe direct bank payments could save fees, but if the PSP doesn’t support them natively, you’re stuck with higher-cost methods).
📌 Scaling and Performance Issues
As your volume grows, a payment system that worked fine for a small shop might start hitting limits. There are technical scaling issues (ensuring the checkout can handle spikes in traffic, that the payment gateway doesn’t throttle you, etc.) and also financial ones (higher volumes might require better rates or trigger higher reserve requirements from processors). A challenge merchants face is renegotiating and optimising as they scale – this might involve engaging with multiple banks or PSPs to get better transaction rates, or upgrading to enterprise plans for more reliability. All of that takes time and know-how. Additionally, new markets often mean new currencies and the need for currency conversion, which adds FX (foreign exchange) considerations and sometimes regulatory hurdles (e.g. having local entities or local bank accounts to repatriate funds efficiently).
📌 Regulatory Diversity and Updates
Especially when operating internationally, merchants must keep up with a constantly evolving regulatory landscape. One year it’s PSD2 in the EU requiring two-factor auth on payments; another year it might be a new consumer rights law in Brazil affecting how refunds must be handled; elsewhere a country might impose data localisation (payment data must be stored in-country). These are not hypothetical – they happen regularly. For instance, Europe’s regulations led to many merchants implementing 3D Secure 2.0 in recent years to comply with the PSD2 mandate for Strong Customer Authentication. That was a significant project for a lot of businesses, sometimes causing friction with customers until it was ironed out. Failing to comply means transactions could be declined by banks or fines could be levied. So merchants find they need either an internal team or external advisors to constantly watch the payment regulatory environment and guide necessary changes.
It’s clear that managing online payments is a multifaceted challenge. It’s not as simple as “just plug in a checkout.” The most successful merchants approach payments as a strategic function of the business. They dedicate resources to it – whether in-house experts or trusted payment partners – understanding that a well-oiled payment operation can be a competitive advantage (higher conversion, fewer losses), while a shaky one can be a bottleneck or liability.
One trend to help tackle these payment challenges is the rise of payment orchestration and unified payments platforms, as mentioned. These solutions aim to handle a lot of the complexity: you integrate once with the orchestration layer, and it connects to multiple payment methods, optimizes routing, and provides a single view of data. It can also abstract some compliance burdens. However, merchants should evaluate if such a solution fits their size and business case, as it adds another partner in the chain.
At the end of the day, merchants must be proactive: invest in solid payment infrastructure and expertise early, rather than treat payments as an afterthought. As the saying in payments goes, if you think good payment handling is expensive, try bad payment handling – failed payments and fraud can cost far more than doing things right from the start.

Source: Depositphotos
Banks and Fintechs: An Evolving Payments Ecosystem
Traditionally, banks have been central to payments (after all, they issue cards and hold accounts), but they weren’t always known for innovation or flexibility in merchant services. Over the last few years, however, banks have been expanding their payment services and forging partnerships with fintech companies to better serve the modern, digital commerce world. This changing landscape is important for merchants, as it may bring new options and improvements in cross-border payments and customer payment experiences.
➤ Digital Wallets and Mobile Apps by Banks
Many banks worldwide have launched their own digital wallets or mobile payment apps. They realized that if they don’t offer a friendly way for customers to pay via smartphones, tech companies will fill the gap. For example, some banks let customers pay peers or merchants directly through the bank’s mobile app, using just a phone number or QR code. Banks are also increasingly supporting integrations with major mobile wallets (so a customer can easily add their debit card to a mobile wallet and use it online or contactless). By doing so, banks stay relevant in the day-to-day transactions of their customers. For merchants, this means you might start seeing payment options that are essentially bank-backed wallets at checkout. Accepting payments from these bank apps can sometimes be as straightforward as adding a new method via your acquirer, and they often ride on instant bank transfer rails. The benefit is trust and reach – consumers trust their banks, and if their banking app can pay you directly, that’s one less hurdle. In some regions, banks from multiple countries have even collaborated to make cross-bank wallets that work internationally.
➤ Peer-to-Peer (P2P) Goes Commercial
We mentioned P2P apps in the previous section. Interestingly, in some markets these are bank-led or bank-consortium-led. For example, there are inter-bank P2P payment services (where multiple banks come together to allow instant transfers between their customers, often via a simple alias like email or phone). A notable case is a system in the U.S. launched by a network of major banks that allows instant P2P payments. These bank-backed P2P services are now entering the retail space – letting customers pay businesses as easily as they pay friends. For merchants, if such a system is popular in your target market, you’ll want to be able to accept it. The good news is banks usually provide a clear way for businesses to join (often through the merchant’s own bank). The fact that banks are supporting P2P for retail means easier, often real-time payments that deposit directly into your account, with low fees. It’s a sign of banks recognising and adapting to the user experience innovations fintechs brought.
➤ Fintech Partnerships for Cross-Border Payments
Cross-border payments (sending or receiving money internationally) have historically been slow and expensive when done through traditional banks (think wire transfers or correspondent banking). Fintech companies saw an opportunity here and have been building solutions for faster, cheaper cross-border flows. Realizing this, banks are increasingly partnering with fintechs to improve their offerings. According to industry reports, about 62% of banks are actively exploring partnerships with fintech firms to enhance cross-border payment solutions. These partnerships can lead to banks using fintech platforms behind the scenes to send money abroad in minutes instead of days and to offer better exchange rates. For e-commerce merchants, this can translate to improvements like faster settlement of international sales, the ability to pay overseas suppliers or receive funds from foreign customers more efficiently, and even new services such as multi-currency accounts (where a bank lets a merchant hold balances in different currencies easily). Some banks are integrating fintech-powered services that automatically route transactions through the cheapest or fastest path worldwide. The expansion in this area is promising for merchants doing global business – it means the old pain points of cross-border payments might gradually ease as banks adopt modern tech.
➤ Banks Offering Merchant Services and Platforms
Another trend is banks stepping up to provide more holistic merchant solutions, sometimes in competition with pure-play payment processors. Banks have long offered basic merchant accounts for card processing, but now some are going further, offering full-service payment gateways, online checkout solutions, and even value-added services like analytics or loyalty integration. They often do this by either acquiring fintech startups or white-labelling fintech solutions. For example, a bank might offer an e-commerce plug-in that includes a checkout with multiple local payment methods – something that historically one would turn to a specialist PSP for. The advantage for merchants using a bank’s solution could be tighter integration with banking services (like everything from loans to treasury management under one roof) and potentially better fees (since banks can cut out some middlemen). However, banks still have to catch up in user experience; this is why many choose to partner with fintechs or tech companies who excel at UI/UX.
➤ Better Support for Cross-Border E-commerce
Many banks are realizing that their business clients (merchants) are no longer operating just locally. Even small businesses can sell globally via online marketplaces or their own websites. This is pushing banks to offer features like dynamic currency conversion (so a merchant can charge customers in their local currency but settle in the merchant’s currency), or multi-currency accounts, or easier access to international acquiring. We also see some banks joining international initiatives or networks to facilitate cross-border payments (for instance, participation in new real-time payment networks that function internationally, or at least regionally). All these efforts mean that in the near future, merchants might not need as many separate providers for different countries – their main bank or acquirer could handle more global transactions with ease.
➤ Fintech-Bank Convergence
The line between banks and fintech payment providers is blurring. There are fintechs getting banking licenses, and banks launching fintech-like apps. For merchants, what matters is the result: more choices and potentially more innovation. One example is the push for real-time payments: in Europe, banks are adopting SEPA Instant Credit Transfer as a standard for euro payments to move in seconds 24/7. Regulators are even aiming to mandate instant payments to make them ubiquitous. As this infrastructure becomes standard, banks can build consumer-friendly services on top (imagine every bank account can function like a Venmo/Zelle, but also pay any merchant instantly). Likewise, in other regions there are similar moves. The future of payments likely involves a closer collaboration between banks and fintechs, delivering speed and convenience with the trust and stability of banks.
For merchants, keeping an eye on these bank innovations is useful. It might mean you can negotiate better terms with your bank for processing, or leverage a new service that simplifies your operations. For instance, if your local bank now offers a plugin for e-commerce that includes all popular local payment methods (because they partnered with a fintech aggregator), you might save yourself from integrating separate solutions.
In conclusion, banks are not sitting still in the face of fintech disruption. They are adapting – by creating digital wallets, enabling P2P payments for retail, partnering for faster cross-border payments, and enhancing their merchant service offerings. This evolution benefits merchants by increasing competition and expanding the toolkit for payments. It also suggests that the future could bring more integrated solutions where the gap between what a bank offers and what a specialized payment provider offers is much smaller. Merchants should evaluate both banks and fintech providers when building their payment strategy, because the best solution might be a combination (e.g., using a bank’s cross-border service alongside a fintech’s superior checkout API).

Source: Depositphotos
Global Payment Trends and the European Fragmentation Puzzle
Stepping back, it’s important to put everything in the context of the global payment trends that are shaping the industry and then zoom into how merchants – particularly European merchants – are affected by regional fragmentation and regulatory diversity.
📈 Global Trends
- Digital Payment Dominance: Cash is steadily declining in use for both in-store and online transactions around the world. Consumers are embracing digital payments – whether cards, mobile wallets, or bank transfers – at an unprecedented rate. For example, in the past few years, digital wallet usage has skyrocketed; forecasts show digital wallets could account for around 60%+ of e-commerce transaction value within the next few years. This means merchants absolutely need to support digital forms of payment or risk alienating the majority of customers. It also means the competition is on to provide the best digital payment experience (fastest, most convenient, most secure) since that’s where the conversions lie.
- Mobile-First and Omnichannel: Consumers globally are going mobile-first. Many shoppers primarily use smartphones for browsing and buying. Payment experiences are evolving accordingly — with one-click payments, biometric authentication (fingerprint or face recognition) on phones, and the use of messaging or social apps to facilitate purchases. Payments are also becoming more omnichannel, meaning customers expect a seamless experience whether they’re on a website, a mobile app, or even in a physical store. This trend pushes merchants to unify their payment systems across channels (for example, allowing a customer’s saved payment method on the app to be used on the website or in-store with equal ease).
- Real-Time Payments: The rise of real-time payment networks (instant bank transfers) in various countries is setting new expectations. In many places, people can send money to each other instantly 24/7 (even at 3 AM on a Sunday) and have it clear in seconds. As this becomes normalised, they’ll expect online purchases to potentially settle faster too. This trend is partly fuelled by regulatory initiatives (like governments or central banks pushing instant payment systems) and partly by customer demand for immediacy. For merchants, it could mean faster cash flow (no more waiting days for funds) and also new ways to pay (like request-to-pay schemes, where you send a request and the customer authorises an instant push payment from their account).
- Embedded Finance: Another big trend is payments (and financial services) becoming embedded in non-financial platforms. For example, e-commerce software might come with built-in payment processing, ride-share apps have built-in payments, social media platforms now facilitate purchases directly. This trend suggests that the distinction between “payment providers” and “commerce platforms” is blurring. Merchants might find that the platform they use to run their store or service (be it a marketplace, a SaaS shop builder, etc.) comes with integrated payment options that are optimised and ready to go. Such an arrangement can simplify setup, though it also can mean less flexibility in choosing providers.
- Data-Driven Personalisation and Security: As payments go digital, they generate a lot of data. Global trends show companies using this data to improve user experiences – like personalised offers or smoothing future checkouts by analysing past behaviour. Likewise, data and AI are being heavily used to improve security (fraud detection systems that learn and adapt). For example, an AI might approve a suspicious-looking transaction because it recognises a subtle pattern that indicates it’s actually the customer (or vice versa, block a seemingly normal one because it spots a hidden sign of fraud).
This data-driven approach is behind services like “network tokens” or “visa tokens” that update card info automatically when a card expires, reducing failed transactions, or risk-based authentication that only challenges the user (like with an OTP) when risk is high, otherwise silently approves to keep it smooth. Merchants benefit from these by seeing higher success rates and less friction for good customers.
📈 European Fragmentation and Diversity
Europe is a fascinating and sometimes frustrating case for payments. Despite the European Union’s efforts to create a single digital market, the payment landscape remains highly fragmented across European countries. Each country often has its own favorite payment methods and banking practices. A few examples:
- Germany has a tradition of invoicing and direct debit payments, and Germans also widely adopted PayPal. Credit card usage in Germany is lower than in, say, France or UK.
- The Netherlands famously prefer their bank transfer system (which we noted has a ~75% online share there).
- Nordic countries like Sweden have high adoption of mobile payment apps and a rapid move toward cashless, plus their bank transfer app (Swish in Sweden).
- Eastern European countries might have lower card penetration, so cash-on-delivery and local bank transfer systems or even cash vouchers can be more common.
- The UK, while not in the EU anymore, has high card usage and digital wallet usage (Apple Pay, etc.) and also their own faster payments network that’s increasingly used in fintech apps.

Source: Depositphotos
Because of this patchwork, a European merchant (or any merchant selling across Europe) needs to adapt to each locale’s preferences. There is no universal solution. This fragmentation also extends to infrastructure: different countries have different banking networks and often different fraud patterns to watch for.
On top of that, regulatory diversity exists even with overarching EU laws. Regulations like PSD2 apply EU-wide, but each country’s regulator might enforce them slightly differently or at different paces. For example, the rollout of PSD2’s Strong Customer Authentication requirement saw varying timelines and approaches across countries, causing some confusion. Additionally, some countries have extra rules; one country might require two receipts for a transaction, another might have a unique tax reporting requirement for payments, etc.
Inconsistent regulatory enforcement across member states causes complexity and imbalances — as noted in European financial analyses. This means a merchant in Europe must be vigilant about not just EU regulations but local interpretations or additional laws (like Germany’s BaFin regulations or France’s CNIL guidelines for data, as examples).
Efforts are underway to unify and defragment Europe’s payments. One major initiative is the European Payments Initiative (EPI), which is aiming to create a unified pan-European payment scheme (likely an account-to-account based one) to compete with global card networks and streamline payments across Europe. If EPI succeeds, perhaps in a few years a merchant could accept a single “European” payment method that effectively works for any EU customer via their bank, simplifying things. However, as of now, that’s still in progress and Europe remains a mosaic.
For European merchants (and those entering Europe), the key is localisation in payments. You must treat payment strategy on a country-by-country basis:
- Offer the major international methods (cards, PayPal-like wallets) as a baseline.
- Then add each country’s popular method: e.g., accept direct debit and invoice in Germany, the local bank transfer scheme in Netherlands, mobile payment apps in Sweden, etc.
- Ensure your fraud checks account for different patterns (what’s normal in one country might be odd in another).
- Be aware of currency issues too – within the Eurozone, the currency is the same, but in the UK, the Nordics, etc., you might want to offer local currency pricing to reduce friction.
European merchants are also heavily affected by compliance (GDPR is an EU creation, PSD2 too). While these regulations often ultimately improve security and trust, in the short term they add to the to-do list of businesses (such as implementing new consent flows and authentication processes). The diversity of languages and customer expectations also plays a role – for instance, even how you present the payment page (some countries expect a redirect to a bank site, others prefer an embedded form) can influence trust.
One more aspect: fragmented banking systems mean costs can be higher. A merchant might need multiple bank accounts in Europe to efficiently collect payments in different countries, or pay higher cross-border fees if they don’t. This is part of why unifying projects and also fintech solutions have been springing up – to reduce those hidden inefficiencies.
In sum, Europe encapsulates both the opportunities and the headaches of global e-commerce payments. It has high consumer spending power and digital adoption but requires nuance to navigate. Merchants that do it well – offering local payment options and smooth experiences in each market – can tap into a continent of customers. Those that assume Europe is homogenous might hit conversion roadblocks or compliance troubles country by country.
Payment Challenges: Final Thoughts
Understanding payment processing in detail – from the initial request to final settlement – is not just an academic exercise but a practical necessity for any online business aiming to scale securely. Payments truly are the backbone of secure online transactions.
The payment landscape is constantly changing: banks and fintechs are merging, global trends indicate a shift towards faster and more digital payments, and in regions such as Europe, managing fragmentation is a crucial aspect. Staying updated on these trends helps businesses anticipate what customers will expect next. For instance, if instant bank payments or a new digital wallet become the norm, being an early adopter can set you apart.
In closing, mastering payment processing is about marrying security with convenience. It’s about making that complex two-second dance from click to confirmation invisible and delightful for the customer, while behind the scenes every safeguard is in place. Merchants who achieve this will not only see fewer failed transactions or fraud issues but also gain something invaluable in e-commerce – the trust of customers worldwide, who know they can click “Pay” with peace of mind.

Source: Depositphotos
Frequently Asked Question